Transcript 974546

Transcript

ID CARD

MetamORF ID

974546

ENSMUST00000148601

Name

Acox1-206

Strand

Biotype

protein_coding

Start-end positions

116171888-116189575

CDS Start-stop positions

116173548-

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:11430

Aliases

Acox,
Acox1, AOX, D130055E20Rik,
ENSMUSG00000020777, MGI:1330812, NCBI:11430,
OFF:Acox1, Paox

Chr 11

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
974607	126	ATC ...	IWR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	Liver
891404	30	CTG ...	LSF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
974551	57	ATA ...	IFT ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	sORF	Liver
313105	288	CTG ...	LMT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, Liver
974620	171	AGG ...	RPP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	Liver
974563	105	TTG ...	LLN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
991214	39	GTG ...	VLR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	Brain
293182	51	TTG ...	LQI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	Brain
295475	39	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
974569	60	ATA ...	INS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF	Liver
316726	114	ATG ...	MPL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, Liver
974560	114	ATC ...	IPT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	Liver
313966	105	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Liver
892251	45	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
317430	240	CTG ...	LCT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, Liver
974577	30	ATT ...	ITP ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	sORF	Liver
974565	63	ATA ...	IWS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	Liver
317704	72	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
974557	78	ATT ...	IFR ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	sORF	Liver
315644	87	TTG ...	LGP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
314523	222	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, Liver
303522	84	ATG ...	MTC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Liver
291593	54	GTG ...	VSL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	Liver
974573	66	ATC ...	ILL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF	Liver
296494	156	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
315815	105	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
974584	39	TTG ...	LAS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Liver
307289	174	CTG ...	LCT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
974594	105	AGG ...	RPP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	Liver
974587	45	ATA ...	IFS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	sORF	Liver
318571	285	ATG ...	MTL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Brain, Liver
9481	39	GTG ...	VSC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
974603	33	AAG ...	KPT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	Liver

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