Transcript 62403 | MetamORF

Transcript

ID CARD

MetamORF ID

62403

ENSMUST00000148373

Name

Scarb1-209

Strand

Biotype

retained_intron

Start-end positions

125283355-125341019

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

NCBI:20778

Aliases

AI120173,
CD36, Cd36l1, Chohd1,
Cla-1, Cla1, D5Ertd460e,
ENSMUSG00000037936, Hdlq1, Hlb398,
MGI:893578, mSR-BI, NCBI:20778,
OFF:Scarb1, Scarb1, SR-B1,
SR-BI, Srb1, SRBI

Chr 5

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
65106	138	CTG ...	LSF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, Testis
63427	39	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
62402	72	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
565119	54	TTG ...	LEA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
870726	75	GTG ...	VVN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
65966	63	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
871633	51	GTG ...	VKM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
172276	105	CTG ...	LLR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver
63072	96	TTG ...	LSV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
872512	168	CTG ...	LTQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
63816	186	CTG ...	LRE ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell, Testis
65342	93	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
870574	48	CTG ...	LAF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
66292	192	TTG ...	LLL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Testis
561555	75	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
568814	57	ATG ...	MTI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
64457	132	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
565786	60	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
871724	114	ATG ...	MTT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
64206	168	GTG ...	VFE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
64871	141	CTG ...	LSP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell, Testis
567919	102	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
65500	69	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
63734	84	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
64050	159	CTG ...	LWP ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell, Testis
1468769	36	ATG ...	MFP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
872141	36	ATG ...	MGL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
64863	189	CTG ...	LTY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
63620	90	TTG ...	LSE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
562753	147	TTG ...	LKA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
62969	168	CTG ...	LSS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell, Testis
63972	189	CTG ...	LLR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Testis
567167	69	ATG ...	MCC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
181379	33	CTG ...	LEF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
1019168	36	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
65923	51	ATG ...	MAQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
64453	42	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Testis
563956	78	TTG ...	LVR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
871651	39	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
65846	123	CTG ...	LFA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis

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