Transcript 45375 | MetamORF

Transcript

ID CARD

MetamORF ID

45375

ENSMUST00000148256

Name

Itgav-207

Strand

Biotype

processed_transcript

Start-end positions

83724527-83725789

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:16410

Aliases

1110004F14Rik,
2610028E01Rik, CD51, D430040G12Rik,
ENSMUSG00000027087, Itgav, MGI:96608,
NCBI:16410, OFF:Itgav

Chr 2

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
45446	120	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
50877	132	CTG ...	LLP ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Testis
970522	45	GTG ...	VDF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, NSC, R1E
45374	138	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
49267	132	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
45934	33	GTG ...	VDF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
48408	135	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
1162330	93	CTG ...	LDV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
46503	171	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
51442	144	CTG ...	LPG ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Testis
51117	150	CTG ...	LLL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Testis
51060	180	CTG ...	LLR ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Testis
49157	141	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
51471	183	CTG ...	LLL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Testis
51231	129	CTG ...	LPL ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis
51596	153	CTG ...	LLL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Testis
48412	168	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
125083	225	CTG ...	LRP ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC
46445	117	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
51058	147	CTG ...	LLP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Testis
117587	105	CTG ...	LDV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E

Export data