Transcript 18174 | MetamORF

Transcript

ID CARD

MetamORF ID

18174

ENSMUST00000147485

Name

Tbc1d10a-203

Strand

Biotype

processed_transcript

Start-end positions

4186789-4214885

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:103724

Aliases

AI447804,
ENSMUSG00000034412, EPI64, mFLJ00288,
MGI:2144164, NCBI:103724, OFF:Tbc1d10a,
Tbc1d10, Tbc1d10a

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
91325	162	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
315319	237	GTG ...	VLR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, R1E
21880	189	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
298502	102	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
23117	210	CTG ...	LDM ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, R1E, Testis
21129	111	GTG ...	VLK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
20744	174	CTG ...	LKH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
317436	123	CTG ...	LRG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14
311814	138	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
21756	72	GTG ...	VIE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
23209	234	CTG ...	LRQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Testis
21698	183	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
20450	72	CTG ...	LVQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
315164	99	CTG ...	LSG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
18173	108	CTG ...	LKA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
24164	243	CTG ...	LEV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, R1E, Testis
21958	120	CTG ...	LFR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
20815	93	CTG ...	LYR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
296074	159	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
90701	57	CTG ...	LHR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
18239	108	CTG ...	LDM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
23674	258	CTG ...	LEE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, R1E, Testis

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