Transcript 346566

Transcript

ID CARD

MetamORF ID

346566

ENSMUST00000147471

Name

Psmd6-203

Strand

Biotype

retained_intron

Start-end positions

14119633-14120933

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:66413

Aliases

2400006A19Rik,
ENSMUSG00000021737, MGI:1913663, NCBI:66413,
OFF:Psmd6, Psmd6

Chr 14

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
999441	222	TTG ...	LKR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil
999361	189	CTG ...	LRI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
999532	207	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
999795	165	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
348024	117	GTG ...	VLG ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, Spleen_B_cell
1000050	294	TTG ...	LCK ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil
999945	255	CTG ...	LSK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil
999418	264	GTG ...	VDL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil
467472	93	CTG ...	LCC ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, Spleen_B_cell
466499	45	ATG ...	MQR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Spleen_B_cell, v6-5
350544	60	ATG ...	MRS ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
346565	30	CTG ...	LAD ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
999544	213	TTG ...	LDE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil
466027	51	ATG ...	MKP ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	Liver, MEF, NSC, Spleen_B_cell, v6-5
999857	174	CTG ...	LRF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain

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