Transcript 332278

Transcript

ID CARD

MetamORF ID

332278

ENSMUST00000147407

Name

Ndufs6-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

73319879-73328452

CDS Start-stop positions

73328300-73328446

CDS Relative positions

7-153

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:407785

Aliases

BC059730,
ENSMUSG00000021606, IP13, MGI:107932,
NCBI:407785, Ndufs6, OFF:Ndufs6

Chr 13

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
942105	78	GTG ...	VSP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	CDS NMD sORF	BMDC, Liver
943162	105	AGG ...	RAA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	BMDC
462628	30	GTG ...	VPW ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	Liver, R1E
998541	135	GTG ...	VNE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
337127	84	GTG ...	VEH ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver, R1E
333589	138	GTG ...	VLT ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	CDS NMD sORF	B_cell, Brain, Liver, R1E
1848987	33	GTG ...	VNQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
335063	120	CTG ...	LLT ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	CDS NMD sORF	B_cell, Brain, Liver, R1E
332277	135	CTG ...	LTF ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	CDS NMD sORF	B_cell, Brain, Liver, R1E
26417	36	ATG ...	MMK ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, R1E, v6-5
336527	99	GTG ...	VWA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
336954	93	GTG ...	VNE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver, R1E
464186	33	GTG ...	VVP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	R1E
338384	117	TTG ...	LTL ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	CDS NMD sORF	B_cell, BMDC, Brain, Liver, R1E, v6-5
1490904	42	ATG ...	MEA ...	Ribo-seq	ATG	strong	1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
27454	33	ATG ...	MKK ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Brain, Liver, R1E, v6-5
1401750	42	CTG ...	LGH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
335351	90	GTG ...	VSW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
782825	111	TTG ...	LIA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver
27239	66	CTG ...	LHG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell

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