Transcript 72356 | MetamORF

Transcript

ID CARD

MetamORF ID

72356

ENSMUST00000147369

Name

Eif3f-202

Strand

Biotype

retained_intron

Start-end positions

108940308-108941008

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:66085

Aliases

0610037M02Rik,
AA409853, Eif3f, Eif3s5,
ENSMUSG00000031029, MGI:1913335, NCBI:66085,
OFF:Eif3f

Chr 7

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
214365	42	CTG ...	LGK ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, Neutrophil, NSC, v6-5
1253469	72	AAG ...	KIV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
72355	30	CTG ...	LLT ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil, NSC, Testis, v6-5
1251534	99	TTG ...	LMS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1251060	36	AAG ...	KCL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1068833	129	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
915203	183	AAG ...	KTC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
223361	51	GTG ...	VTY ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
226034	63	TTG ...	LDS ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, v6-5
1251408	180	ACG ...	TCF ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
912051	69	ATA ...	IVP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
4103	39	ATG ...	MTL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
1255417	54	AGG ...	RGL ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
73730	159	GTG ...	VIG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, Testis
228152	51	GTG ...	VLS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, Neutrophil, NSC
1252501	39	AAG ...	KWE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1256007	33	CTG ...	LYY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF
1673882	66	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF

Export data