Transcript 23783 | MetamORF

Transcript

ID CARD

MetamORF ID

23783

ENSMUST00000147201

Name

Retreg3-204

Strand

Biotype

processed_transcript

Start-end positions

101098583-101119893

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

NCBI:67998

Aliases

1300010M03Rik,
4933404C01Rik, AI551748, ENSMUSG00000017802,
Fam134c, MGI:1915248, NCBI:67998,
OFF:Retreg3, Retreg3

Chr 11

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1124580	33	CTG ...	LKS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
305009	126	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
18030	174	CTG ...	LLK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
304767	48	TTG ...	LCT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
23782	288	CTG ...	LTF ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Spleen_B_cell, Testis, v6-5
301882	195	TTG ...	LAF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain
299855	63	GTG ...	VWE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
21174	207	GTG ...	VTP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
296949	99	GTG ...	VFL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF
300441	120	CTG ...	LVE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain
19490	180	TTG ...	LWL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
305468	87	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
24250	270	TTG ...	LGR ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Testis, v6-5
291606	117	TTG ...	LTS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, v6-5
1338772	36	TTG ...	LTN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
298165	111	GTG ...	VLG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain
303992	45	TTG ...	LSV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
20949	171	CTG ...	LKG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
306969	66	CTG ...	LVW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
299762	117	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
293714	225	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
645499	39	ATG ...	MAH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	NSC
292399	78	TTG ...	LMI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF
305040	93	TTG ...	LLA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
24021	279	TTG ...	LAM ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis, v6-5
292699	36	CTG ...	LWC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
20781	183	ATG ...	MLW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
305518	90	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
20715	57	TTG ...	LRR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
308955	108	CTG ...	LGP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
18731	150	CTG ...	LKG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
311340	78	GTG ...	VQA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
300613	99	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3

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