Transcript 56146 | MetamORF

Transcript

ID CARD

MetamORF ID

56146

ENSMUST00000147183

Name

Rbbp4-204

Strand

Biotype

retained_intron

Start-end positions

129324824-129335249

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:19646

Aliases

ENSMUSG00000057236,
MGI:1194912, mRbAp48, NCBI:19646,
OFF:Rbbp4, RBAP48, Rbbp4

Chr 4

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
59456	45	TTG ...	LSW ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, Testis, v6-5
56145	138	CTG ...	LGT ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, Testis
1225705	51	ATC ...	IGL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
56502	51	CTG ...	LEW ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
1231357	51	AGG ...	RST ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
57266	69	TTG ...	LVM ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, Testis, v6-5
1227333	57	ACG ...	TGD ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1231204	51	AGG ...	RER ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1229122	264	GTG ...	VSS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
56977	105	CTG ...	LVI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Neutrophil, NSC, Testis
58714	135	GTG ...	VEE ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, Testis, v6-5
57028	123	GTG ...	VIN ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
56252	102	GTG ...	VIA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Testis
56491	66	GTG ...	VMT ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
1226048	252	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
706	75	CTG ...	LKG ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, Testis, v6-5
898149	63	ATT ...	ISA ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1228412	153	ATT ...	IHR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14

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