Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

50

ID

ENSMUST00000146989

Name

Wdr3-205

Strand

-

Biotype

retained_intron

Start-end positions

100142499-100162407

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

AAT ...

Gene

ID

NCBI:269470

Aliases

AW546279,
D030020G18Rik, ENSMUSG00000033285, MGI:2443143,
NCBI:269470, OFF:Wdr3, Wdr3


Chr 3

ORFs

76 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1646394 45

ATG ...

MWQ ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1057810 135

GTG ...

VKQ ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
v6-5
818470 72

CTG ...

LEY ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1648404 33

TTG ...

LRR ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Intronic
    sORF
MEF
506358 81

GTG ...

VTG ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Spleen_B_cell, v6-5
1220960 192

TTG ...

LPA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1057561 66

CTG ...

LLA ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
v6-5
1220641 276

CTG ...

LIH ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Intronic
    sORF
E14
506551 54

ATG ...

MVF ...

Ribo-seq
ATG strong 3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Spleen_B_cell, v6-5
503581 108

TTG ...

LNS ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
Spleen_B_cell, v6-5
503206 54

CTG ...

LNQ ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Spleen_B_cell
1219358 36

AGG ...

RSL ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1219509 45

AGG ...

RPP ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Intronic
    sORF
E14
506960 69

CTG ...

LGR ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell, v6-5
536072 48

CTG ...

LDC ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
Neutrophil, v6-5
1222920 36

ATA ...

ICS ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Intronic
    sORF
E14
49 57

CTG ...

LQD ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, MEF,
Skin_tumor, Spleen_B_cell, v6-5
1219304 33

AGG ...

RHS ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1171617 48

CTG ...

LGS ...

Ribo-seq
CTG strong 2 sORFs_org_Mouse
    Intronic
    sORF
MEF, v6-5
1222416 54

ATG ...

MRM ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
E14
506386 51

GTG ...

VFG ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Spleen_B_cell, v6-5
1648421 60

GTG ...

VRK ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1173360 30

CTG ...

LSS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1174811 45

GTG ...

VAL ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1057566 96

CTG ...

LCV ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
v6-5
1173678 36

GTG ...

VKV ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, v6-5
504172 42

CTG ...

LPM ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Spleen_B_cell,
v6-5
1881055 156

GTG ...

VWG ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Intronic
    sORF
R1E
505660 36

TTG ...

LVT ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Intronic
    sORF
E14, Spleen_B_cell, v6-5
503943 54

CTG ...

LSA ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Spleen_B_cell
1056274 57

GTG ...

VSL ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
v6-5
507183 60

GTG ...

VGL ...

Ribo-seq
GTG strong 4 sORFs_org_Mouse
    Intronic
    sORF
MEF, Spleen_B_cell, v6-5
1173566 81

CTG ...

LCP ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
893070 78

GTG ...

VCQ ...

Ribo-seq
GTG weak 6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF,
v6-5
1223077 99

ATA ...

IAT ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1172970 39

TTG ...

LFL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Intronic
    sORF
MEF, v6-5
1218540 174

GTG ...

VRT ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1218703 111

ATC ...

IKE ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1222151 54

AAG ...

KFW ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1174094 156

GTG ...

VMY ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
1173906 42

TTG ...

LYS ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
817164 117

TTG ...

LMT ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1057401 63

CTG ...

LAV ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
v6-5
1221977 153

ATT ...

IGG ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1375606 30

ATG ...

MRP ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1173113 39

CTG ...

LTK ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1174804 69

ATG ...

MFS ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Intronic
    sORF
MEF, v6-5
1221682 48

AAG ...

KQS ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1173055 45

ATG ...

MDT ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, v6-5
1647739 63

GTG ...

VVR ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1219289 75

ACG ...

TSV ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1220796 132

CTG ...

LAS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1171240 114

GTG ...

VLE ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
1172490 75

ATG ...

MRT ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Intronic
    sORF
MEF, v6-5
505848 42

GTG ...

VET ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Spleen_B_cell
1174714 60

GTG ...

VSA ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Intronic
    sORF
MEF, v6-5
747699 72

GTG ...

VAV ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Intronic
    sORF
MEF
817392 114

ATG ...

MTQ ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
540614 99

TTG ...

LCL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
502750 36

ATG ...

MRR ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Spleen_B_cell
1174194 51

TTG ...

LLD ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, v6-5
503466 54

TTG ...

LEA ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Spleen_B_cell, v6-5
750334 117

TTG ...

LQL ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
Neutrophil, v6-5
747459 33

CTG ...

LSA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
503067 99

GTG ...

VIN ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Spleen_B_cell,
v6-5
503733 57

CTG ...

LDF ...

Ribo-seq
CTG strong 4 sORFs_org_Mouse
    Intronic
    sORF
MEF, NSC, Spleen_B_cell,
v6-5
1220543 54

CTG ...

LRG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1222868 72

AGG ...

RKY ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1222840 213

TTG ...

LYS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1218606 219

GTG ...

VEL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1375288 138

GTG ...

VPK ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Intronic
    sORF
E14
536231 102

GTG ...

VTL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Intronic
    sORF
MEF
504233 33

GTG ...

VTD ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
503759 30

TTG ...

LYQ ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Spleen_B_cell
506483 72

GTG ...

VKI ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Spleen_B_cell, v6-5
1220223 45

ATG ...

MME ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Intronic
    sORF
E14

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5