Transcript 877289

Transcript

ID CARD

MetamORF ID

877289

ENSMUST00000146852

Name

Capns1-206

Strand

Biotype

retained_intron

Start-end positions

30193546-30195036

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:12336

Aliases

Capa-4,
Capa4, Capn4, Capns1,
Cdps, Css1, D7Ertd146e,
ENSMUSG00000001794, MGI:88266, NCBI:12336,
OFF:Capns1

Chr 7

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
912577	30	AAG ...	KTA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
877288	30	CTG ...	LGG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver
76608	144	CTG ...	LLA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1026599	135	GTG ...	VLG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
912768	123	CTG ...	LIS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF
914597	114	AGG ...	RPD ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1027550	207	TTG ...	LVN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1027342	144	CTG ...	LGN ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
912979	42	AGG ...	RRW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1024784	156	CTG ...	LGG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1689796	69	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
914633	54	AGG ...	RRW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
912679	204	GTG ...	VNS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
913025	33	ATC ...	ILG ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
914885	192	TTG ...	LKG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
1575870	189	AAG ...	KGG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
73215	141	CTG ...	LAA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1025873	72	CTG ...	LGG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF

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