Transcript 1122395

Transcript

ID CARD

MetamORF ID

1122395

ENSMUST00000146696

Name

Upp1-204

Strand

Biotype

retained_intron

Start-end positions

9133015-9136082

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:22271

Aliases

AI325217,
ENSMUSG00000020407, MGI:1097668, NCBI:22271,
OFF:Upp1, UdRPase, Up,
UPase, Upp, Upp1

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1286196	75	ACG ...	TGD ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1287460	201	ATC ...	ITQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1292601	171	AAG ...	KPE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1337317	186	GTG ...	VNE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1292481	66	AAG ...	KET ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1342023	117	CTG ...	LDA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1340794	153	TTG ...	LLQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1124007	90	GTG ...	VQC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1287935	81	GTG ...	VQP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1292906	135	GTG ...	VIR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14
1339332	108	TTG ...	LQR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1123819	33	TTG ...	LWN ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	NSC, v6-5
1285465	117	CTG ...	LDR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1128083	90	GTG ...	VSP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1283931	69	GTG ...	VEY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
935251	102	AAG ...	KTN ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1339339	222	CTG ...	LEP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1284419	54	ATA ...	ISR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1127799	63	CTG ...	LCI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1287189	147	CTG ...	LGK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14
1291469	75	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1284118	153	ATT ...	IVL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1285999	63	GTG ...	VSE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1123502	72	CTG ...	LNE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1122864	93	TTG ...	LVQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1123515	99	CTG ...	LWC ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1285573	108	CTG ...	LQG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1286315	51	ATG ...	MSA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1125718	105	CTG ...	LVQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1122394	39	ATG ...	MCL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	NSC, v6-5

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