Transcript 44114 | MetamORF

Transcript

ID CARD

MetamORF ID

44114

ENSMUST00000146423

Name

1110008P14Rik-202

Strand

Biotype

protein_coding

Start-end positions

32377097-32381862

CDS Start-stop positions

32379464-32381770

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:73737

Aliases

1110008P14Rik,
C79326, ENSMUSG00000039195, MGI:1920987,
NCBI:73737, OFF:1110008P14Rik

Chr 2

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
49301	129	CTG ...	LDH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, Liver, R1E, Testis
49896	204	ATG ...	MTA ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, C2C12, E14, Liver, MEF, Neutrophil, Testis
47569	75	CTG ...	LES ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream sORF	Liver, NSC, R1E, Testis
44113	150	TTG ...	LDQ ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14, Liver, R1E, Testis
47388	120	CTG ...	LEE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, Liver, R1E, Testis
965233	39	AGG ...	RHA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
46902	78	CTG ...	LLE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream sORF	Liver, NSC, R1E, Testis
1206283	168	ATG ...	MRA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
50809	225	ATG ...	MRA ...	Predicted Ribo-seq	ATG		9	sORFs_org_Mouse Mackowiak2015	Alternative Downstream Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
50001	183	GTG ...	VTW ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
1503569	51	CTG ...	LEF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	NSC
412618	147	ATG ...	MTA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
493058	45	CTG ...	LRR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Spleen_B_cell

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