Transcript 3337 | MetamORF

Transcript

ID CARD

MetamORF ID

3337

ENSMUST00000146420

Name

Mob1a-205

Strand

Biotype

processed_transcript

Start-end positions

83326018-83334443

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:232157

Aliases

4022402H07Rik,
ENSMUSG00000043131, MGI:2442631, MOB1,
Mob1a, MOB4B, Mobk1b,
Mobkl1b, NCBI:232157, OFF:Mob1a

Chr 6

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2915	81	ATG ...	MEP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Spleen_B_cell
415096	30	CTG ...	LEL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
201975	33	ATG ...	MQR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Spleen_B_cell
3397	105	GTG ...	VDF ...	Ribo-seq	GTG		19	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
527361	78	ATG ...	MNT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, R1E, Spleen_B_cell
525134	66	GTG ...	VLG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
2834	81	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
528714	120	CTG ...	LQL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Spleen_B_cell
583945	33	ATG ...	MCS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1470481	96	TTG ...	LMT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E
527823	93	TTG ...	LFS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
526942	126	TTG ...	LSL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Spleen_B_cell
528888	60	ATG ...	MAL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Spleen_B_cell
526655	93	TTG ...	LAR ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
529296	57	CTG ...	LRQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Spleen_B_cell
525806	114	CTG ...	LWI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Spleen_B_cell
525344	39	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
201929	30	CTG ...	LKG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, R1E
582600	96	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
525075	39	ATG ...	MTK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, Spleen_B_cell
527795	99	CTG ...	LWE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Spleen_B_cell
527060	78	GTG ...	VGG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
910422	87	ATC ...	INM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
3336	78	TTG ...	LYG ...	Ribo-seq	TTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
527067	42	TTG ...	LMT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Spleen_B_cell

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