Transcript 221055

Transcript

ID CARD

MetamORF ID

221055

ENSMUST00000146317

Name

Epn1-203

Strand

Biotype

protein_coding

Start-end positions

5080240-5089961

CDS Start-stop positions

5083755-

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:13854

Aliases

AA269831,
ENSMUSG00000035203, Epn1, Ibp1,
MGI:1333763, NCBI:13854, OFF:Epn1

Chr 7

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
230650	114	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
222364	114	CTG ...	LRS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain
426302	126	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, B_cell
914889	30	ATG ...	MAC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	E14
531437	135	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
222664	57	ATG ...	MVG ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	sORF	B_cell, Brain, E14
590466	84	ATG ...	MIP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	3T3
533174	123	GTG ...	VRT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
221054	105	CTG ...	LLP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, B_cell, Brain
75922	33	CTG ...	LTV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain

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