Transcript 91549 | MetamORF

Transcript

ID CARD

MetamORF ID

91549

ENSMUST00000146129

Name

Acadvl-206

Strand

Biotype

retained_intron

Start-end positions

70011222-70012574

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:11370

Aliases

Acadvl,
ENSMUSG00000018574, MGI:895149, NCBI:11370,
OFF:Acadvl, vlcad

Chr 11

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
888304	57	TTG ...	LIM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
1599995	90	GTG ...	VCS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
890412	39	GTG ...	VPT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
305095	141	GTG ...	VLG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Spleen_B_cell
450181	129	GTG ...	VGD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
91548	138	GTG ...	VER ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Testis
1600789	45	ATG ...	MTF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
890370	63	TTG ...	LLS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, NSC
889397	51	ATG ...	MLL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
302527	90	CTG ...	LSA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, NSC
888885	60	CTG ...	LST ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, NSC
1596954	117	CTG ...	LRA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
1597500	57	TTG ...	LKG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
1484526	75	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	NSC

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