Transcript 28486 | MetamORF

Transcript

ID CARD

MetamORF ID

28486

ENSMUST00000145958

Name

Gmfb-203

Strand

Biotype

protein_coding

Start-end positions

46814262-46819575

CDS Start-stop positions

-46816227

CDS Relative positions

Sequences

Transcript sequence

TAG ...

Genome browsers

UCSC

Gene

NCBI:63985

Aliases

3110001H22Rik,
3110001O16Rik, AI851627, C79176,
D14Ertd630e, ENSMUSG00000062014, Gmfb,
MGI:1927133, NCBI:63985, OFF:Gmfb

Chr 14

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
420940	120	GTG ...	VEK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	C2C12
945006	48	ATG ...	MNA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
343237	39	GTG ...	VSL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	3T3, BMDC, MEF
29736	147	GTG ...	VVC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Testis
29317	87	TTG ...	LCI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, Testis
28651	57	ATG ...	MAE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	BMDC, Brain, Testis
28485	63	ATG ...	MMM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	BMDC, Brain, Testis
344391	63	GTG ...	VSL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	B_cell, Brain, MEF
29952	60	ATG ...	MMA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	BMDC, Brain, Testis
28498	30	CTG ...	LLY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, MEF, Testis
346729	51	ATG ...	MNL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, Brain
29889	150	TTG ...	LVV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Testis
349924	57	TTG ...	LTR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF

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