Transcript 588917

Transcript

ID CARD

MetamORF ID

588917

ENSMUST00000145783

Name

Arhgef1-213

Strand

Biotype

retained_intron

Start-end positions

24904358-24926589

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:16801

Aliases

Arhgef1,
ENSMUSG00000040940, Lbcl2, Lsc,
MGI:1353510, NCBI:16801, OFF:Arhgef1

Chr 7

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
845101	30	TTG ...	LFQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
589123	159	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
593474	183	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
590596	60	CTG ...	LRM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
216374	105	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
845273	30	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1443270	36	CTG ...	LVA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1443346	129	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
591323	132	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1441279	75	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
588951	162	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
590615	156	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
591690	66	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
595646	177	TTG ...	LLD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
592953	174	CTG ...	LDD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
593048	165	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
216825	96	CTG ...	LEP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
589648	234	CTG ...	LIS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
590633	189	GTG ...	VHV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
228558	60	TTG ...	LTH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, Liver
1441441	192	GTG ...	VQS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
840044	33	ATG ...	MRI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
226852	171	GTG ...	VSR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
1441402	105	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver

Export data