Transcript 253097

Transcript

ID CARD

MetamORF ID

253097

ENSMUST00000145716

Name

Pfkl-202

Strand

Biotype

protein_coding

Start-end positions

78000680-78010083

CDS Start-stop positions

-78005512

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:18641

Aliases

AA407869,
ATP-PFK, ENSMUSG00000020277, MGI:97547,
NCBI:18641, OFF:Pfkl, PFK-B,
PFK-L, Pfkl

Chr 10

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
285299	102	GTG ...	VDL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF	BMDC, Brain, E14, MEF, R1E
1028663	54	GTG ...	VLT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	BMDC, Brain, E14
605245	201	TTG ...	LFL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain
512396	72	GTG ...	VAT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	E14
1240117	165	GTG ...	VPA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	E14
516339	72	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
1026012	51	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
1027711	168	CTG ...	LCV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
1030238	192	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
1268709	66	ACG ...	TAA ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	sORF	E14
1016865	210	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
437035	81	GTG ...	VSS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	E14
1801579	90	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	R1E
1033764	96	CTG ...	LEK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	BMDC, Brain, E14, R1E
1238733	75	AGG ...	RAL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1272352	63	AAG ...	KEA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
253096	87	CTG ...	LRM ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF	BMDC, Brain, E14, MEF, R1E

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