Transcript 414286

Transcript

ID CARD

MetamORF ID

414286

ENSMUST00000145668

Name

Eya3-210

Strand

Biotype

processed_transcript

Start-end positions

132639085-132723477

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:14050

Aliases

AI844637,
ENSMUSG00000028886, Eya3, MGI:109339,
NCBI:14050, OFF:Eya3

Chr 4

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
510853	66	TTG ...	LVP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell, v6-5
60599	285	CTG ...	LIT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
548256	42	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1081788	102	GTG ...	VDW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
60079	267	TTG ...	LVP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, v6-5
510510	42	CTG ...	LVS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Spleen_B_cell
414285	72	AAG ...	KMQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
59592	84	GTG ...	VKK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF
511473	69	CTG ...	LLV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
551138	60	CTG ...	LDE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1733923	72	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
550299	39	GTG ...	VSL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
59938	123	GTG ...	VIG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
547618	33	ATG ...	MWL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
59854	255	CTG ...	LAK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, v6-5
155263	42	ATG ...	MWK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
60256	240	CTG ...	LYG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1081036	84	CTG ...	LAF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
510216	75	ATG ...	MVS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
509068	36	ATG ...	MSC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Spleen_B_cell
155398	54	GTG ...	VTR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
145755	33	CTG ...	LHQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
548635	36	ATG ...	MDE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
823334	30	ATG ...	MLM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1376945	90	CTG ...	LCE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1379070	51	TTG ...	LNR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
511218	36	GTG ...	VKT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
513355	48	TTG ...	LES ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1082864	120	GTG ...	VGV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5

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