Transcript 728309

Transcript

ID CARD

MetamORF ID

728309

ENSMUST00000145423

Name

Col5a1-202

Strand

Biotype

protein_coding

Start-end positions

28017441-28037015

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:12831

Aliases

AI413331,
Col5a1, ENSMUSG00000026837, MGI:88457,
NCBI:12831, OFF:Col5a1

Chr 2

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
412744	96	ATG ...	MIR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, MEF, v6-5
1637873	30	CTG ...	LQG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	MEF
1726287	93	ATG ...	MPA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
728308	165	CTG ...	LPT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, MEF
729184	48	ATG ...	MIT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, MEF, v6-5
728688	147	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	3T3
1639432	66	CTG ...	LGR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF	MEF
732730	114	ATG ...	MPP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, MEF
1164739	42	CTG ...	LQF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	v6-5
1636951	72	ATG ...	MGL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	sORF	MEF
731823	48	CTG ...	LEG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, MEF, v6-5
734319	63	ATG ...	MRK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, MEF
1642164	45	ATG ...	MQM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
735304	42	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
1726391	96	TTG ...	LMP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF

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