Transcript 57337 | MetamORF

Transcript

ID CARD

MetamORF ID

57337

ENSMUST00000144883

Name

Stk11-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

80115803-80130469

CDS Start-stop positions

80116618-80128512

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:20869

Aliases

AA408040,
ENSMUSG00000003068, Lkb1, MGI:1341870,
NCBI:20869, OFF:Stk11, Par-4,
R75140, Stk11

Chr 10

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
608360	60	CTG ...	LRR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell
58265	57	ATG ...	MAA ...	Ribo-seq	ATG	strong	10	sORFs_org_Mouse	NMD sORF Upstream	B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
253188	51	GTG ...	VCS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
65221	288	GTG ...	VAD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Testis
67166	51	GTG ...	VSR ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative NMD sORF Upstream	3T3, B_cell, Brain, Spleen_B_cell, Testis
245739	129	GTG ...	VNG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
61018	147	CTG ...	LMG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Testis
68285	99	GTG ...	VLD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, Testis
592622	123	GTG ...	VDD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
61348	117	GTG ...	VVF ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	Spleen_B_cell, Testis
73385	33	GTG ...	VDI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Testis
78026	81	CTG ...	LSG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell, Brain, Spleen_B_cell, Testis
619389	33	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	3T3
57336	42	GTG ...	VPE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Testis
68544	246	CTG ...	LMS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
71681	57	TTG ...	LRV ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative NMD sORF Upstream	3T3, B_cell, Brain, Spleen_B_cell, Testis
1270449	234	GTG ...	VEL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14, R1E
1237729	57	CTG ...	LEF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
59544	204	CTG ...	LPG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	R1E, Testis
1431941	228	TTG ...	LSL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	R1E
83635	237	GTG ...	VGM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Testis
278669	138	CTG ...	LHP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
65477	42	CTG ...	LRR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, Testis
220128	57	CTG ...	LDT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
900841	294	AAG ...	KGR ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
1230947	210	ATC ...	IFL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
190463	186	CTG ...	LEE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
62114	135	CTG ...	LLG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Testis
74423	87	GTG ...	VME ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Testis
61433	165	CTG ...	LPV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	R1E, Spleen_B_cell, Testis
220028	30	CTG ...	LVP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
175631	93	TTG ...	LAL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Spleen_B_cell
76467	108	GTG ...	VKE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, Testis
77607	96	CTG ...	LDS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Testis
82691	57	TTG ...	LEY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell
1240970	279	ACG ...	TAS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
167596	111	GTG ...	VES ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	E14
79962	51	CTG ...	LDS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Testis
71874	45	ATG ...	MDG ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	NMD sORF Upstream	B_cell, BMDC, E14, Spleen_B_cell, Testis
182631	126	GTG ...	VSR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF Upstream	Brain

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