Transcript 51399 | MetamORF

Transcript

ID CARD

MetamORF ID

51399

ENSMUST00000144693

Name

Angel2-209

Strand

Biotype

processed_transcript

Start-end positions

190928846-190946962

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:52477

Aliases

2610307I21Rik,
5730410O10Rik, AI845692, Angel2,
D1Ertd396e, D1Ertd654e, ENSMUSG00000026634,
MGI:1196310, NCBI:52477, OFF:Angel2

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
319119	114	TTG ...	LIH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
585104	84	TTG ...	LWT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
299331	66	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
51398	237	GTG ...	VTT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E, Testis
93958	36	GTG ...	VRT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
665755	75	GTG ...	VNG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
334653	36	CTG ...	LPL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
331197	138	TTG ...	LVG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
647375	111	CTG ...	LDH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
307807	81	GTG ...	VLC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
721015	30	TTG ...	LLA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
692465	63	TTG ...	LDW ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
310210	273	CTG ...	LQP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
242890	60	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
390513	54	GTG ...	VTQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
704619	48	TTG ...	LTP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
351012	216	CTG ...	LLY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
609698	51	ATG ...	MLT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
316450	126	TTG ...	LKL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
198537	201	TTG ...	LNC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
361895	180	CTG ...	LFE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
659228	99	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
408530	285	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
379188	150	GTG ...	VMS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
726305	108	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
55588	285	TTG ...	LSS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E, Testis

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