Transcript 367612

Transcript

ID CARD

MetamORF ID

367612

ENSMUST00000144666

Name

Lsg1-207

Strand

Biotype

retained_intron

Start-end positions

30568013-30587592

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:224092

Aliases

5830465I20,
AA409273, D16Bwg1547e, ENSMUSG00000022538,
Lsg1, MGI:107236, NCBI:224092,
OFF:Lsg1

Chr 16

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
367611	294	TTG ...	LIS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
370791	120	CTG ...	LNI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1859413	165	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1621244	42	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
370526	93	GTG ...	VSK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
476412	105	CTG ...	LNL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
697650	150	GTG ...	VVT ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
34852	81	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1859968	36	TTG ...	LPG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
374104	114	GTG ...	VNN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
696868	147	GTG ...	VTA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
371522	96	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1859143	30	ATG ...	MRM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
1147120	75	GTG ...	VLR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1859690	168	TTG ...	LLT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
33595	78	CTG ...	LSF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
793807	222	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
475829	66	TTG ...	LTP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1715301	39	GTG ...	VKD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1356509	75	TTG ...	LLE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
475600	72	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
692756	111	GTG ...	VLL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
371985	75	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
693682	156	GTG ...	VTV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
1187902	171	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E

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