Transcript 17578 | MetamORF

Transcript

ID CARD

MetamORF ID

17578

ENSMUST00000144552

Name

Znhit3-204

Strand

Biotype

processed_transcript

Start-end positions

84911291-84916349

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:448850

Aliases

ENSMUSG00000020526,
MGI:3051596, Myohd1, NCBI:448850,
OFF:Znhit3, TRIP-3, Trip3,
Znhit3

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
21694	132	TTG ...	LMI ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
933478	234	ATT ...	IVG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
20705	45	TTG ...	LEK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
90863	153	CTG ...	LNP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
21321	93	CTG ...	LMR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
22566	285	GTG ...	VRS ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
91621	156	CTG ...	LLN ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
17577	78	CTG ...	LNC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Neutrophil, R1E, Testis
24211	204	CTG ...	LQN ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
19035	141	CTG ...	LRQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
296560	45	CTG ...	LKP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
932483	225	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
91931	60	GTG ...	VEF ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
23020	189	CTG ...	LNC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, Testis
22509	210	GTG ...	VSL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
19338	54	GTG ...	VVC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
91690	159	TTG ...	LLL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
1840663	30	GTG ...	VEP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E

Export data