Transcript 240054

Transcript

ID CARD

MetamORF ID

240054

ENSMUST00000144486

Name

Atp6v0d1-202

Strand

Biotype

retained_intron

Start-end positions

105530651-105539476

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:11972

Aliases

Ac39,
AI267038, Atp6d, Atp6v0d1,
ENSMUSG00000013160, MGI:1201778, NCBI:11972,
OFF:Atp6v0d1, P39, VATX,
Vma6

Chr 8

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
611786	33	ATG ...	MSR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1520398	30	CTG ...	LNL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	NSC
240991	168	CTG ...	LLI ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1072178	150	CTG ...	LHQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, v6-5
246318	36	ATG ...	MAT ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Neutrophil, NSC
880442	114	CTG ...	LTV ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
881705	135	CTG ...	LAN ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
1071939	123	GTG ...	VPK ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, v6-5
1326599	78	GTG ...	VNI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, NSC
240053	174	GTG ...	VIL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
881181	108	GTG ...	VSV ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5

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