Transcript 78534 | MetamORF

Transcript

ID CARD

MetamORF ID

78534

ENSMUST00000144404

Name

Farsa-205

Strand

Biotype

retained_intron

Start-end positions

84857009-84867026

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:66590

Aliases

0610012A19Rik,
ENSMUSG00000003808, Farsa, Farsla,
MGI:1913840, NCBI:66590, OFF:Farsa,
pheRS

Chr 8

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1261151	42	ATA ...	IIP ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
80912	90	TTG ...	LQL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
78533	57	CTG ...	LAE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
79231	84	CTG ...	LVQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
1262285	108	ACG ...	TDN ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
609918	72	ATG ...	MAV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
605379	75	CTG ...	LMA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
78594	102	GTG ...	VQK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
1262238	270	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
79486	51	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1261733	123	AGG ...	RDR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
82204	123	GTG ...	VDS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
1262223	168	GTG ...	VVC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1263924	261	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
754404	54	CTG ...	LRS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1264717	165	GTG ...	VCS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
79026	78	GTG ...	VSK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
605264	39	TTG ...	LRL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
81169	93	CTG ...	LKT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
80206	180	GTG ...	VGF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
78818	48	GTG ...	VSK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
756926	96	ATG ...	MKC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
754147	42	CTG ...	LKR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
78853	81	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
607141	144	CTG ...	LRC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
754422	99	TTG ...	LMH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
79958	60	CTG ...	LHP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis

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