Transcript 2065 | MetamORF

Transcript

ID CARD

MetamORF ID

2065

ENSMUST00000144361

Name

Aacs-203

Strand

Biotype

retained_intron

Start-end positions

125506149-125512737

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:78894

Aliases

2210408B16Rik,
Aacs, ENSMUSG00000029482, MGI:1926144,
NCBI:78894, OFF:Aacs, SUR5

Chr 5

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
66154	51	CTG ...	LVP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Testis
65124	102	GTG ...	VSA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Testis
172156	108	CTG ...	LPF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, Spleen_B_cell
520487	156	CTG ...	LAS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, Liver, Spleen_B_cell
517238	174	GTG ...	VFL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, Spleen_B_cell
520859	60	ATG ...	MMA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
518120	57	ATG ...	MAP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
1434049	147	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
171262	75	TTG ...	LVL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
2085	30	TTG ...	LWD ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Skin_tumor, Testis
1432889	141	GTG ...	VFA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
2079	33	GTG ...	VLW ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Skin_tumor, Testis
519637	168	CTG ...	LDD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, Liver, Spleen_B_cell
2064	51	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
64252	69	CTG ...	LYD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Testis
519732	90	CTG ...	LFI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
61405	93	CTG ...	LAT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Testis
1433676	42	ATG ...	MHQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
563197	75	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3

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