Transcript 133135

Transcript

ID CARD

MetamORF ID

133135

ENSMUST00000144355

Name

Stk16-208

Strand

Biotype

protein_coding

Start-end positions

75210848-75212235

CDS Start-stop positions

75211329-

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:20872

Aliases

EDPK,
ENSMUSG00000026201, Krct, MGI:1313271,
MPSK, NCBI:20872, OFF:Stk16,
PKL12, Stk16, TSF-1

Chr 1

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1038939	219	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Neutrophil
131481	132	CTG ...	LKR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	MEF, Neutrophil, v6-5
126539	66	TTG ...	LTI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Neutrophil, v6-5
314987	123	ATG ...	MTE ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Neutrophil, v6-5
109224	123	GTG ...	VRE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Neutrophil
150598	114	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	B_cell
23991	66	CTG ...	LRR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil
409087	186	GTG ...	VEF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	C2C12, Neutrophil
327334	174	GTG ...	VAD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	C2C12, Neutrophil
413053	138	GTG ...	VDS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	C2C12, Neutrophil
26688	51	ATG ...	MPD ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil
410527	132	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Neutrophil
117353	108	CTG ...	LAE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
38476	69	ATG ...	MTR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	E14, MEF
499935	123	ATG ...	MTE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	MEF, Neutrophil, v6-5
147968	75	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Neutrophil, v6-5
307150	54	CTG ...	LEE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
1184985	57	CTG ...	LRR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	MEF
344304	162	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Neutrophil
142033	93	GTG ...	VSA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	v6-5
146284	150	CTG ...	LEG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF, v6-5
133134	258	CTG ...	LTG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, Neutrophil

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