Transcript 373031

Transcript

ID CARD

MetamORF ID

373031

ENSMUST00000144215

Name

Il10rb-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

91406320-91424924

CDS Start-stop positions

-91414631

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:16155

Aliases

6620401D04Rik,
AI528744, CRF2-4, Crfb4,
D16H21S58, D21S58h, ENSMUSG00000022969,
IL-10R2, Il10r2, Il10rb,
MGI:109380, NCBI:16155, OFF:Il10rb

Chr 16

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1046363	93	TTG ...	LKN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
35034	30	CTG ...	LTF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	BMDC
373030	147	GTG ...	VSP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, MEF, Neutrophil
371189	141	CTG ...	LRF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
368227	114	CTG ...	LEP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
1045381	60	GTG ...	VQY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
1045880	150	GTG ...	VRV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
1620944	57	ATG ...	MTH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF

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