Transcript 18605 | MetamORF

Transcript

ID CARD

MetamORF ID

18605

ENSMUST00000144188

Name

Suz12-204

Strand

Biotype

nonsense_mediated_decay

Start-end positions

80025195-80032001

CDS Start-stop positions

-80029186

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:52615

Aliases

2610028O16Rik,
AI195385, AU016842, AW536442,
D11Ertd530e, ENSMUSG00000017548, MGI:1261758,
mKIAA0160, NCBI:52615, OFF:Suz12,
Suz12

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
772109	156	TTG ...	LLG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	B_cell, v6-5
1124549	192	ATG ...	MGV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
651273	30	GTG ...	VKM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
21035	33	CTG ...	LWN ...	Ribo-seq	CTG		8	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
1122306	39	CTG ...	LPQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, v6-5
446848	87	ATG ...	MSV ...	Ribo-seq	ATG		7	sORFs_org_Mouse	NMD sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
454351	78	ATG ...	MMA ...	Ribo-seq	ATG		5	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Spleen_B_cell, v6-5
1285829	102	AGG ...	RRE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
445582	75	ATG ...	MAP ...	Ribo-seq	ATG		7	sORFs_org_Mouse	NMD sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
933991	81	AGG ...	RFI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	BMDC
1291191	57	ATC ...	ILR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	E14
1286063	51	AGG ...	RIY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
646159	108	CTG ...	LKM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	v6-5
1126446	174	CTG ...	LFD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1291688	135	CTG ...	LNC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	E14
448165	99	ATG ...	MFQ ...	Ribo-seq	ATG		6	sORFs_org_Mouse	NMD sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
647836	102	ATG ...	MEK ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	NMD sORF	v6-5
1121507	177	GTG ...	VEQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
639674	114	TTG ...	LNL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	NMD sORF	v6-5
18604	42	GTG ...	VMK ...	Ribo-seq	GTG		8	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
303910	33	CTG ...	LDL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	Brain, E14, v6-5
299707	66	ATG ...	MQE ...	Ribo-seq	ATG		8	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
20155	63	GTG ...	VNE ...	Ribo-seq	GTG		8	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
770329	162	TTG ...	LIL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	B_cell, v6-5
933629	141	ATA ...	IDV ...	Ribo-seq	ATA		2	sORFs_org_Mouse	NMD sORF	BMDC, E14
1290160	45	AGG ...	RKS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14

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