Transcript 56452 | MetamORF

Transcript

ID CARD

MetamORF ID

56452

ENSMUST00000143111

Name

Exosc3-203

Strand

Biotype

processed_transcript

Start-end positions

45316794-45320336

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:66362

Aliases

2310005D06Rik,
AI593501, ENSMUSG00000028322, Exosc3,
MGI:1913612, NCBI:66362, OFF:Exosc3,
Rrp40

Chr 4

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
163122	285	TTG ...	LML ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, R1E
166323	282	ATG ...	MLE ...	Predicted Ribo-seq	ATG		6	sORFs_org_Mouse Mackowiak2015	ncRNA sORF	3T3, B_cell, Brain, Liver, R1E
56451	78	GTG ...	VWS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58480	168	CTG ...	LGK ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E, Testis
60738	240	TTG ...	LKG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, R1E, Testis
163306	270	GTG ...	VSQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, R1E
827447	192	GTG ...	VDS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, MEF, Neutrophil, R1E, v6-5
59508	150	TTG ...	LEI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E, Testis
164550	279	TTG ...	LEG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, R1E
58628	102	TTG ...	LEI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
56786	36	TTG ...	LTA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
56934	177	GTG ...	VQE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
57030	141	GTG ...	VFG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E, Testis
164866	237	CTG ...	LRH ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Neutrophil, R1E, v6-5

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