Transcript 33519 | MetamORF

Transcript

ID CARD

MetamORF ID

33519

ENSMUST00000142955

Name

Urb1-205

Strand

Biotype

retained_intron

Start-end positions

90783143-90810392

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:207932

Aliases

4921511H13Rik,
5730405K23Rik, AA670781, AI645590,
ENSMUSG00000039929, MGI:2146468, mKIAA0539,
NCBI:207932, OFF:Urb1, Urb1

Chr 16

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
33889	162	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34656	135	CTG ...	LNH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
33990	153	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34586	108	CTG ...	LKS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, Testis, v6-5
1146822	48	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1147861	228	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
33518	87	GTG ...	VVG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
33802	84	GTG ...	VGA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34550	159	GTG ...	VRF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
696003	33	TTG ...	LEE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
791967	30	TTG ...	LWL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
477082	48	CTG ...	LSG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1146506	210	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1146395	99	GTG ...	VRD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1147677	60	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
33546	126	GTG ...	VHD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
793869	66	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
34667	75	CTG ...	LMD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Testis, v6-5
792570	60	TTG ...	LTT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
34722	111	CTG ...	LAY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1146665	96	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
34007	120	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1147905	219	TTG ...	LHF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1147848	54	GTG ...	VIM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5

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