Transcript 16747 | MetamORF

Transcript

ID CARD

MetamORF ID

16747

ENSMUST00000142932

Name

Slc7a11-202

Strand

Biotype

retained_intron

Start-end positions

50415970-50443614

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAA ...

Genome browsers

UCSC

Gene

NCBI:26570

Aliases

9930009M05Rik,
AI451155, ENSMUSG00000027737, MGI:1347355,
NCBI:26570, OFF:Slc7a11, Slc7a11,
sut, xCT

Chr 3

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
128467	36	CTG ...	LVC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
133256	78	GTG ...	VVI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
134078	81	CTG ...	LVV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
16944	69	TTG ...	LDA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
17166	51	CTG ...	LII ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Skin_tumor
1729659	45	CTG ...	LKH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
16746	66	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
16860	126	CTG ...	LSY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Skin_tumor
135244	33	GTG ...	VKF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
17139	30	TTG ...	LFE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Skin_tumor

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