Transcript 19323 | MetamORF

Transcript

ID CARD

MetamORF ID

19323

ENSMUST00000142877

Name

Grb10-205

Strand

Biotype

processed_transcript

Start-end positions

11949600-11956024

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:14783

Aliases

5730571D09Rik,
AI325020, ENSMUSG00000020176, Grb10,
Meg1, MGI:103232, mKIAA0207,
NCBI:14783, OFF:Grb10

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1701574	48	GTG ...	VEH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1756573	96	CTG ...	LLV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
317536	300	CTG ...	LWT ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, R1E, v6-5
311268	42	GTG ...	VDK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
1701075	138	TTG ...	LGV ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
304198	156	CTG ...	LSK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
1756382	126	GTG ...	VNR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1703055	105	CTG ...	LCQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1294537	258	AAG ...	KNQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1124911	54	CTG ...	LRD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1701492	141	GTG ...	VVE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
1703479	138	GTG ...	VEI ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
296514	54	GTG ...	VWM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
90975	66	GTG ...	VNP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Testis
1124522	36	GTG ...	VKM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1293843	291	AAG ...	KTT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
315037	225	GTG ...	VAR ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, R1E, v6-5
1701101	72	GTG ...	VDD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
641051	42	CTG ...	LDS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
19322	57	GTG ...	VAR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Testis
303434	132	CTG ...	LWT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
1123855	39	GTG ...	VPA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1122537	51	ATG ...	MSK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1703105	51	CTG ...	LVE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
1122996	30	ATG ...	MGP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
1703487	129	CTG ...	LVN ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
318995	234	GTG ...	VNP ...	Ribo-seq	GTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, R1E, v6-5
309622	48	ATG ...	MTT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1703575	63	GTG ...	VCC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1702320	93	CTG ...	LVY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF

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