Transcript 193889

Transcript

ID CARD

MetamORF ID

193889

ENSMUST00000142806

Name

Paip2b-203

Strand

Biotype

retained_intron

Start-end positions

83812857-83831713

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:232164

Aliases

ENSMUSG00000045896,
MGI:2386865, NCBI:232164, OFF:Paip2b,
Paip2b

Chr 6

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1247991	48	ATC ...	ITQ ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
194710	72	ATG ...	MRK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF
1245181	45	GTG ...	VRT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
195883	51	TTG ...	LQN ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF
200267	78	ATG ...	MDM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF
1243939	96	CTG ...	LNT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
196500	159	GTG ...	VAS ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14
529134	36	ATG ...	MDP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, E14
193888	138	GTG ...	VKC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
199178	33	ATG ...	MQR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1244788	39	AGG ...	RLR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14

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