Transcript 59793 | MetamORF

Transcript

ID CARD

MetamORF ID

59793

ENSMUST00000142665

Name

Wrap73-203

Strand

Biotype

processed_transcript

Start-end positions

154142409-154156816

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:59002

Aliases

2610044M17Rik,
5330425N03Rik, Dd57, ENSMUSG00000029029,
MGI:1891749, NCBI:59002, OFF:Wrap73,
Wdr8, Wrap73

Chr 4

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
61087	195	GTG ...	VAW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
147479	102	CTG ...	LRI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
160442	102	CTG ...	LDQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
59792	255	TTG ...	LDG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
156120	114	TTG ...	LYT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
160154	150	GTG ...	VIR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
162610	195	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
553048	42	ATG ...	MSP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
515167	168	GTG ...	VQV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
61012	243	CTG ...	LLS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E, Testis
60984	240	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
59879	267	CTG ...	LLY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
60316	210	CTG ...	LGI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1653173	45	ATG ...	MSA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
826876	108	TTG ...	LCR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
60247	168	CTG ...	LAI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
60068	264	CTG ...	LYS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
153039	33	ATG ...	MLS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
148725	30	CTG ...	LSG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
157559	51	CTG ...	LRG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain

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