Transcript 145756

Transcript

ID CARD

MetamORF ID

145756

ENSMUST00000142301

Name

Eya3-208

Strand

Biotype

processed_transcript

Start-end positions

132656700-132723443

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:14050

Aliases

AI844637,
ENSMUSG00000028886, Eya3, MGI:109339,
NCBI:14050, OFF:Eya3

Chr 4

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1231377	111	AGG ...	RFG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1227331	189	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
546304	39	TTG ...	LKW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
1230182	45	TTG ...	LRE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
513355	48	TTG ...	LES ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
155263	42	ATG ...	MWK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
414136	30	ATT ...	IQS ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14
1226539	120	ATT ...	IVS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
897698	33	AAG ...	KKS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
548256	42	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1229348	84	GTG ...	VIG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
551138	60	CTG ...	LDE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
60599	285	CTG ...	LIT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, v6-5
1227693	63	AGG ...	RIT ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
145755	33	CTG ...	LHQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
546545	90	TTG ...	LDR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
547618	33	ATG ...	MWL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
60079	267	TTG ...	LVP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
515838	84	CTG ...	LQF ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, R1E, Spleen_B_cell, v6-5
1231663	108	CTG ...	LTD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1095	33	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
549108	30	CTG ...	LIH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
59854	255	CTG ...	LAK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Neutrophil, R1E
151573	63	GTG ...	VHV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
510510	42	CTG ...	LVS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
1228627	57	AGG ...	RRA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1080617	48	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
60256	240	CTG ...	LYG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
59938	123	GTG ...	VIG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil
161645	63	GTG ...	VLG ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
550299	39	GTG ...	VSL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
899011	210	CTG ...	LQF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14

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