Transcript 61431 | MetamORF

Transcript

ID CARD

MetamORF ID

61431

ENSMUST00000142276

Name

Arpc1a-205

Strand

Biotype

retained_intron

Start-end positions

145104273-145108592

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:56443

Aliases

0610010H08Rik,
1110030K07Rik, 41kDa, AA407347,
Arpc1a, ENSMUSG00000029621, MGI:1928896,
NCBI:56443, OFF:Arpc1a, Sid32,
Sid329

Chr 5

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1234948	63	AGG ...	RAT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
180231	33	TTG ...	LSQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
183098	42	GTG ...	VCH ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain
61488	153	GTG ...	VSI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
62423	69	CTG ...	LIS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, Testis
168260	81	CTG ...	LFD ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, Spleen_B_cell
62754	132	CTG ...	LDV ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, Spleen_B_cell, Testis
65485	111	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
66197	141	GTG ...	VSK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, Spleen_B_cell, Testis
65537	150	TTG ...	LTF ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, Spleen_B_cell, Testis, v6-5
62914	33	TTG ...	LET ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
64615	138	GTG ...	VDK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
176143	60	ATG ...	MKW ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain
64531	117	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
170645	30	TTG ...	LSQ ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
61430	48	ATG ...	MTA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Testis
64967	132	CTG ...	LRT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis

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