Transcript 49980 | MetamORF

Transcript

ID CARD

MetamORF ID

49980

ENSMUST00000141955

Name

Hsd17b12-203

Strand

Biotype

processed_transcript

Start-end positions

94114576-94157893

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:56348

Aliases

2610510O05Rik,
AI172963, ENSMUSG00000027195, Hsd17b12,
KIK-I, Kik1, MGI:1926967,
NCBI:56348, OFF:Hsd17b12

Chr 2

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
48583	42	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Spleen_B_cell
46720	258	CTG ...	LYW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
101799	54	GTG ...	VRG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, v6-5
51357	294	CTG ...	LYW ...	Ribo-seq	CTG		18	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
49091	36	CTG ...	LME ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, Spleen_B_cell
501420	177	GTG ...	VRS ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
809318	30	TTG ...	LYL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
15396	60	TTG ...	LFA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Spleen_B_cell, v6-5
45494	33	ATG ...	MEL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, MEF, Spleen_B_cell
51703	255	CTG ...	LRA ...	Ribo-seq	CTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
116986	129	CTG ...	LGG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, MEF, Spleen_B_cell
51450	210	GTG ...	VGN ...	Ribo-seq	GTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
47638	87	CTG ...	LIS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
50049	159	TTG ...	LPT ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, MEF, NSC, Spleen_B_cell, Testis
742844	72	GTG ...	VRG ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Liver, MEF, NSC, v6-5
50631	219	GTG ...	VWC ...	Ribo-seq	GTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
49997	195	TTG ...	LVG ...	Ribo-seq	TTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
49979	285	GTG ...	VGA ...	Ribo-seq	GTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
45027	51	TTG ...	LLQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, MEF, Spleen_B_cell
50720	261	CTG ...	LAL ...	Ribo-seq	CTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
114064	159	GTG ...	VRS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, MEF, Spleen_B_cell
966834	282	GTG ...	VRP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
51329	234	GTG ...	VRP ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, Testis
500696	147	CTG ...	LGG ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
112862	57	GTG ...	VVR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Spleen_B_cell, v6-5
500279	75	GTG ...	VVR ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Liver, MEF, NSC, Spleen_B_cell, v6-5

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