Transcript 17975 | MetamORF

Transcript

ID CARD

MetamORF ID

17975

ENSMUST00000141695

Name

Rnf167-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

70647287-70651412

CDS Start-stop positions

70647869-70648413

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

NCBI:70510

Aliases

0610010G05Rik,
5730408C10Rik, AU019305, AV328608,
ENSMUSG00000040746, MGI:1917760, NCBI:70510,
OFF:Rnf167, Rnf167

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
309240	51	ATG ...	MPA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, E14, Neutrophil
17974	105	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
21267	57	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Testis
22125	39	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
774906	30	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell, E14
20203	207	GTG ...	VWT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
18947	48	TTG ...	LLP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Testis
304946	276	GTG ...	VDP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
20665	54	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Testis
20905	132	ATG ...	MRS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
22171	87	CTG ...	LFA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Testis
91487	90	ATG ...	MKG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
296520	75	TTG ...	LHP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
303341	60	CTG ...	LVF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
303530	114	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
22101	54	ATG ...	MSN ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	NMD sORF Upstream	B_cell, E14, Testis
1123794	228	CTG ...	LSV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
90642	66	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
1125705	156	CTG ...	LAG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
20284	81	TTG ...	LGY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
20890	96	CTG ...	LSI ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	NMD sORF Upstream	B_cell, Testis
308780	36	TTG ...	LQT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
1128182	135	TTG ...	LRF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
91248	111	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
21251	153	CTG ...	LYI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
994308	78	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
19700	66	CTG ...	LSY ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell, E14, Testis
995277	33	TTG ...	LAM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
19754	138	CTG ...	LAM ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis

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