Transcript 67551 | MetamORF

Transcript

ID CARD

MetamORF ID

67551

ENSMUST00000141251

Name

Emg1-203

Strand

Biotype

retained_intron

Start-end positions

124704951-124712141

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:14791

Aliases

C2f,
Emg1, ENSMUSG00000004268, Grcc2f,
MGI:1315195, NCBI:14791, OFF:Emg1

Chr 6

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
525624	75	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
67889	129	CTG ...	LNR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell, Testis
69955	156	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
69674	234	GTG ...	VQE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
69676	30	TTG ...	LAV ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
527114	45	CTG ...	LAC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
528417	42	TTG ...	LWC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
70002	48	ATG ...	MAA ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, C2C12, E14, R1E, Spleen_B_cell, Testis
2792	69	GTG ...	VNP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
67550	159	GTG ...	VVA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
3322	78	CTG ...	LIE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
68512	150	CTG ...	LML ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
70359	78	TTG ...	LGQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell, Testis
70486	153	CTG ...	LLM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
2826	114	TTG ...	LLQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
3285	81	GTG ...	VLI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
526404	141	GTG ...	VSG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
529124	183	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
525993	168	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E

Export data