Transcript 93059 | MetamORF

Transcript

ID CARD

MetamORF ID

93059

ENSMUST00000141220

Name

Tm9sf4-205

Strand

Biotype

processed_transcript

Start-end positions

153161541-153189060

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:99237

Aliases

AA986553,
AU045326, B930079E06, ENSMUSG00000068040,
MGI:2139220, mKIAA0255, NCBI:99237,
OFF:Tm9sf4, Tm9sf4

Chr 2

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
47916	132	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
47144	135	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E
93169	135	TTG ...	LGL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
14915	66	TTG ...	LTV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
100180	45	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
45348	60	GTG ...	VEQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
48965	153	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
47567	165	GTG ...	VAT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E
100259	135	TTG ...	LLT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
115825	120	CTG ...	LWP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
93058	78	GTG ...	VMT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, R1E
49521	42	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, R1E
106577	75	ATG ...	MTR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
104174	39	ATG ...	MAT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
49413	165	CTG ...	LRG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E
48446	171	CTG ...	LPV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, R1E
105957	54	ATG ...	MCS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
108354	114	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
97670	132	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
113637	138	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
48376	168	GTG ...	VLR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, R1E

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