Transcript 62011 | MetamORF

Transcript

ID CARD

MetamORF ID

62011

ENSMUST00000140960

Name

Tbc1d1-206

Strand

Biotype

processed_transcript

Start-end positions

64298530-64351481

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:57915

Aliases

1110062G02Rik,
AI385682, AW555803, ENSMUSG00000029174,
MGI:1889508, mKIAA1108, NCBI:57915,
Nob1, Nobq1, OFF:Tbc1d1,
Tbc1, Tbc1d1

Chr 5

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
64370	81	CTG ...	LMF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
66169	63	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
65821	192	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
63404	111	GTG ...	VPY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
64906	189	CTG ...	LNK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
63115	81	GTG ...	VEE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
63901	93	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
64908	180	CTG ...	LDQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
65541	198	CTG ...	LKA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
63762	126	GTG ...	VWE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
67384	261	TTG ...	LEK ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, R1E, Spleen_B_cell, Testis
62688	192	TTG ...	LLN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
62861	114	CTG ...	LEV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
63392	156	GTG ...	VCE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
832294	39	TTG ...	LTW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
63720	72	CTG ...	LRR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
62764	216	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
63692	216	GTG ...	VFE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
65581	135	CTG ...	LKQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
67434	240	TTG ...	LRK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, R1E, Spleen_B_cell, Testis
65962	120	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
64985	234	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
66817	216	CTG ...	LEQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, R1E, Spleen_B_cell, Testis
66374	207	TTG ...	LQV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, R1E, Spleen_B_cell, Testis
63552	204	GTG ...	VPR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
65332	141	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
62010	108	GTG ...	VER ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
64268	162	GTG ...	VLQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
65433	90	CTG ...	LQM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
62723	201	GTG ...	VAN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
64314	129	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis

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