Transcript 48514 | MetamORF

Transcript

ID CARD

MetamORF ID

48514

ENSMUST00000140511

Name

Rrbp1-206

Strand

Biotype

processed_transcript

Start-end positions

143950492-143955182

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:81910

Aliases

1700087N07Rik,
5730465C04Rik, ENSMUSG00000027422, ES/130,
MGI:1932395, mKIAA1398, mRRp0,
mRRp1.8, mRRp10, mRRp15a,
mRRp15b, mRRp16.8, mRRp2,
mRRp41, mRRp47, mRRp5.4,
NCBI:81910, OFF:Rrbp1, p180,
Rrbp1

Chr 2

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1365604	72	TTG ...	LQA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
729012	39	GTG ...	VKP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, NSC, v6-5
862257	48	ATG ...	MPS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Liver, MEF
48658	108	TTG ...	LKL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, Neutrophil, R1E, Testis, v6-5
492416	69	CTG ...	LRR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, v6-5
862276	66	CTG ...	LFP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
737421	39	GTG ...	VSE ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, MEF, NSC, v6-5
740248	42	CTG ...	LSV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
965894	90	ATC ...	ITS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
969990	99	AGG ...	REA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
48513	60	CTG ...	LDE ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, Liver, Neutrophil, NSC, R1E, Testis, v6-5
101882	102	TTG ...	LRE ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, Neutrophil, R1E, v6-5
969623	90	AGG ...	RQL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
968222	66	AGG ...	RRP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
733969	36	GTG ...	VTS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
412094	75	AAG ...	KRS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
965650	48	AAG ...	KSE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
969959	45	AGG ...	RLS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1166692	117	CTG ...	LSH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC, v6-5
48696	81	CTG ...	LLE ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, Liver, Neutrophil, NSC, R1E, Testis, v6-5
739400	42	GTG ...	VQS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, MEF, Neutrophil, v6-5
731519	51	ATG ...	MKP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, NSC, v6-5
1639940	33	GTG ...	VAT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
967981	114	ATA ...	IVL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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