Transcript 294915

Transcript

ID CARD

MetamORF ID

294915

ENSMUST00000140377

Name

Tvp23b-203

Strand

Biotype

processed_transcript

Start-end positions

62883662-62916780

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:67510

Aliases

1810036I24Rik,
ENSMUSG00000014177, Fam18b, Fam18b1,
MGI:1914760, NCBI:67510, OFF:Tvp23b,
Tvp23b

Chr 11

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
20339	135	GTG ...	VVY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
297123	57	TTG ...	LWS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E
299041	63	GTG ...	VRL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, R1E
639611	69	GTG ...	VWC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
310525	30	CTG ...	LRP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E, v6-5
1338067	51	TTG ...	LAR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1125921	33	TTG ...	LPL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
311310	45	ATG ...	MRM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
297237	39	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
310796	30	GTG ...	VFE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
652522	54	GTG ...	VPT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
297276	114	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
17371	75	CTG ...	LRW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, v6-5
296925	48	TTG ...	LMR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
449695	42	ATG ...	MVI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell

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