Transcript 88415 | MetamORF

Transcript

ID CARD

MetamORF ID

88415

ENSMUST00000140011

Name

Ebp-202

Strand

Biotype

retained_intron

Start-end positions

8185331-8187174

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:13595

Aliases

AI255399,
Ebp, ENSMUSG00000031168, MGI:107822,
mSI, NCBI:13595, OFF:Ebp,
Pabp, SI, Td

Chr X

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
630183	90	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, v6-5
275739	63	CTG ...	LVL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, v6-5
633279	45	GTG ...	VLD ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, R1E
283136	69	GTG ...	VTA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, v6-5
630438	84	GTG ...	VLD ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, NSC, R1E
1278116	147	GTG ...	VIA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
633621	105	TTG ...	LVI ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E
628602	96	TTG ...	LSL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, v6-5
89010	120	CTG ...	LNA ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis
631041	42	CTG ...	LDS ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, R1E
442860	33	GTG ...	VPR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, R1E
628889	72	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
280267	33	ATG ...	MVG ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, v6-5
88532	195	CTG ...	LTE ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
88414	207	GTG ...	VLY ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
628486	102	GTG ...	VIP ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, R1E
282207	42	CTG ...	LSQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, R1E, v6-5
89628	204	CTG ...	LYF ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
441180	117	CTG ...	LYG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, v6-5

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