Transcript 62904 | MetamORF

Transcript

ID CARD

MetamORF ID

62904

ENSMUST00000139853

Name

Rnf10-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

115241779-115272301

CDS Start-stop positions

115242548-

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:50849

Aliases

AA675014,
ENSMUSG00000041740, MGI:1859162, mKIAA0262,
NCBI:50849, OFF:Rnf10, RIE2,
Rnf10

Chr 5

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
183927	141	CTG ...	LNH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, R1E, v6-5
1800636	129	GTG ...	VVS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
1382422	36	CTG ...	LLF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
1803039	126	GTG ...	VRE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
1660658	42	CTG ...	LCI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
62903	45	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	R1E, Testis
64391	36	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver, Testis
1086334	171	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	E14, R1E, v6-5
1801790	288	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	R1E
173958	132	TTG ...	LLN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	E14, R1E
1663367	33	GTG ...	VLW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
64623	84	TTG ...	LGP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	R1E, Testis
1085934	87	CTG ...	LHY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, R1E, v6-5
1800825	297	CTG ...	LEY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	R1E
1240436	228	ATG ...	MDP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	E14
1803987	300	GTG ...	VLE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
1804995	108	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	R1E
1311575	60	GTG ...	VGT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	E14
1801648	48	CTG ...	LKT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	R1E
1310862	33	CTG ...	LFS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	E14
1803115	138	GTG ...	VRC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
1802400	153	CTG ...	LHP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	R1E
1660375	30	TTG ...	LWL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
1801993	126	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E

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