Transcript 165832

Transcript

ID CARD

MetamORF ID

165832

ENSMUST00000139651

Name

Aurkaip1-205

Strand

Biotype

protein_coding

Start-end positions

155831272-155832739

CDS Start-stop positions

155832016-

CDS Relative positions

Sequences

Transcript sequence

TAT ...

Genome browsers

UCSC

Gene

NCBI:66077

Aliases

0610033H09Rik,
Aip, Akip, Aurkaip1,
ENSMUSG00000065990, MGI:1913327, MRP-S38,
NCBI:66077, OFF:Aurkaip1

Chr 4

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
513249	129	ATG ...	MLF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Brain
825497	99	CTG ...	LQA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain
513766	138	TTG ...	LAA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain
56401	90	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
1430966	279	TTG ...	LGE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
1230172	138	AAG ...	KIR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1554953	45	TTG ...	LRS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain
509199	81	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain
1731601	57	GTG ...	VQK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
1657950	57	TTG ...	LCF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	MEF
823230	69	CTG ...	LVR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain
544514	78	CTG ...	LGC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	MEF
165831	228	GTG ...	VHA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF	Brain, E14, Liver, MEF
57072	96	CTG ...	LPW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Brain

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