Transcript 48463 | MetamORF

Transcript

ID CARD

MetamORF ID

48463

ENSMUST00000139531

Name

Etl4-216

Strand

Biotype

processed_transcript

Start-end positions

20798672-20808881

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:208618

Aliases

6620402G01Rik,
9430077C05Rik, BC026657, E330027G05Rik,
ENSMUSG00000036617, Etl-4, Etl4,
MGI:95454, NCBI:208618, OFF:Etl4,
Skt

Chr 2

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1211943	48	AGG ...	RQR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1212094	174	ATA ...	ISV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1212692	54	AAG ...	KQS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1210475	42	TTG ...	LNV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1214037	84	AGG ...	RQF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1212970	36	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1207133	78	ATA ...	IRA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1210387	99	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1209439	93	ATC ...	IQT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1208696	42	AGG ...	RWL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1210754	117	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1214456	111	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1209592	150	ATA ...	IVY ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1207467	120	AAG ...	KNR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1210268	222	AAG ...	KPS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1213349	54	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1211848	81	ATA ...	IPH ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1210540	39	AGG ...	RLW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1209985	39	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1214405	51	ATT ...	IIP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1209216	51	AAG ...	KYL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1208111	126	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1213131	36	TTG ...	LSM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1212874	165	ATG ...	MEG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1206850	177	AGG ...	RNL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1211220	33	AGG ...	RFC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1210762	156	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1207890	72	ATG ...	MRM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1207739	90	ATG ...	MQT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1209564	102	AGG ...	RDK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1213850	45	AGG ...	RHQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1209445	156	AAG ...	KRQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1213889	30	ATG ...	MRK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1207869	30	ATT ...	ILP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1210823	195	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1210086	186	ATG ...	MYR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1206667	234	AGG ...	RGF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1213976	138	ACG ...	TKG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
1206529	135	AGG ...	RMK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1214297	126	AAG ...	KGK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1211994	51	ATG ...	MSR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1212508	126	ACG ...	TKT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
1213371	165	AAG ...	KPS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
48462	69	CTG ...	LDK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1212498	297	CTG ...	LDS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1212602	147	AAG ...	KCS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1211194	63	ATA ...	IGW ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1210984	72	AGG ...	RAG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1208234	81	AGG ...	RST ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14

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